PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G097200.1
Common NamePHAVU_005G097200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 331aa    MW: 35937.6 Da    PI: 7.0924
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G097200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.51.4e-35221262101
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsss 87 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++     +   a   +a++ ++++++ +s
  Phvul.005G097200.1  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELppwhpT---A---NAADAENNHNHAGS 106
                         79**************************************************************554331...2...22222222222222 PP

                 TCP  88 g.....kaaksaa.kskksq 101
                         g     ++++s+  + + ++
  Phvul.005G097200.1 107 GdmaiaEQSESSGyNFQLQR 126
                         23444422222221222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3222121IPR005333Transcription factor, TCP
PROSITE profilePS5136932.9862482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLAELPPWHP TANAADAENN HNHAGSGDMA IAEQSESSGY  120
NFQLQRQLGE DHDNHHSAFI PSPIDTDAIA FFPTTTAPSS INFQTYPPDI ISRTNTSTED  180
LGLSLHSFQD PGLIHGQSQA GANQTQTPSN HQTLFSGSTQ MGFEANYPRI VTWNNDAGTD  240
MNRTGFMVNS PALLGQGGSA AYSQRGTLQS SFSPSLRPWS DIPMASSAEH HKTQPIQQAS  300
IFGSRFLSDA LPGFCIPARI QGQDGSHGLW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149767.10.0hypothetical protein PHAVU_005G097200g
SwissprotQ8LPR52e-72TCP4_ARATH; Transcription factor TCP4
TrEMBLV7BYS90.0V7BYS9_PHAVU; Uncharacterized protein
STRINGGLYMA12G33640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-71TCP family protein